Package: BLOQ 0.1-2
BLOQ: Methods to Impute and Analyze Data with BLOQ Observations
Provides methods for estimating the area under the concentration versus time curve (AUC) and its standard error in the presence of Below the Limit of Quantification (BLOQ) observations. Two approaches are implemented: direct estimation using censored maximum likelihood, and a two-step approach that first imputes BLOQ values using various methods and then computes the AUC using the imputed data. Technical details are described in Barnett et al. (2020), "Methods for Non-Compartmental Pharmacokinetic Analysis With Observations Below the Limit of Quantification," Statistics in Biopharmaceutical Research. <doi:10.1080/19466315.2019.1701546>.
Authors:
BLOQ_0.1-2.tar.gz
BLOQ_0.1-2.zip(r-4.7)BLOQ_0.1-2.zip(r-4.6)BLOQ_0.1-2.zip(r-4.5)
BLOQ_0.1-2.tgz(r-4.6-any)BLOQ_0.1-2.tgz(r-4.5-any)
BLOQ_0.1-2.tar.gz(r-4.7-any)BLOQ_0.1-2.tar.gz(r-4.6-any)
BLOQ_0.1-2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
BLOQ/json (API)
| # Install 'BLOQ' in R: |
| install.packages('BLOQ', repos = c('https://vahidnassiri.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:95863d89b3. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 114 | ||
| source / vignettes | OK | 150 | ||
| linux-release-x86_64 | OK | 109 | ||
| macos-release-arm64 | OK | 203 | ||
| macos-oldrel-arm64 | OK | 182 | ||
| windows-devel | OK | 91 | ||
| windows-release | OK | 58 | ||
| windows-oldrel | OK | 75 | ||
| wasm-release | OK | 107 |
Exports:estimateAUCandStdErrestimateAUCwithCMLperTimePointestimateAUCwithFullCMLestimateAUCwithMVNCMLestimateAUCwithPairwiseCMLimputeBLOQimputeCMLimputeConstantimputeKernelDensityEstimationimputeROSsimulateBealModelFixedEffectssimulateBealModelMixedEffects
Dependencies:digestgenericslatticemaxLikmiscToolsmvtnormsandwichzoo
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Estimate AUC and its standard error | estimateAUCandStdErr |
| estimate AUC with censored maximum likelihood per time point | estimateAUCwithCMLperTimePoint |
| estimate AUC with Full censored maximum likelihood | estimateAUCwithFullCML |
| estimate AUC with multivariate normal censored maximum likelihood | estimateAUCwithMVNCML |
| estimate AUCwith pairwise censored maximum likelihood | estimateAUCwithPairwiseCML |
| impute BLOQ's with various methods | imputeBLOQ |
| imputing BLOQ's using censored maximum likelihood | imputeCML |
| imputing BLOQ's with a constant value | imputeConstant |
| imputing BLOQ's using kernel density estimation | imputeKernelDensityEstimation |
| imputing BLOQ's using regression on order statistics | imputeROS |
| simulate data from Beal model with fixed effects | simulateBealModelFixedEffects |
| simulate data from Beal model with fixed and random effects | simulateBealModelMixedEffects |
